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Viral Special Pathogens

Viral special pathogens are highly infectious agents that cause severe and often fatal disease in humans. Viruses in this category include Ebola virus, Marburg virus and certain hantaviruses. These viruses are capable of spreading person-to-person, frequently cause illness resulting in severe morbidity or death and have zero or very limited  medical treatments. Additionally, due to the significant risk to human health they also usually require strict biosafety and containment protocols.  

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Contact the Infectious Diseases team: [email protected]

What APHL Does

Supporting Best Practices in Testing

APHL develops and promotes tools and resources to ensure access to high quality testing. APHL works closely with our member public health laboratories, which serve a critical role in rapid and accurate testing to inform patient management, public health action and surveillance of these highly contagious pathogens. 

Emergency Support Ebola Outbreak Response

APHL member laboratories are at the forefront of detecting novel threats and responding to infectious disease outbreaks, so APHL provides leadership and scientific guidance for coordinated laboratory responses to public health crises. Since the 2014 West African Ebola outbreak, APHL has worked both domestically and internationally to strengthen national laboratory systems to prepare for and respond to Ebola, as many public health laboratories in the US can conduct testing for Ebola.

Learn about APHL’s response contributions during Ebola outbreaks

    Ebola virus

    Ebola virus disease (Ebola) is caused by a group of viruses known as orthoebolaviruses (formerly ebolavirus). Three of these viruses cause severe illness in people, presenting with a clinically-similar viral hemorrhagic fever:

    • Ebola virus (EBOV) [Orthoebolavirus zairense, previously Zaire ebolavirus]
    • Sudan virus (SUDV) [Orthoebolavirus sudanense, previously Sudan ebolavirus]
    • Bundibugyo virus (BDV) [Orthoebolavirus bundibugyoense, previously Bundibuygo ebolavirus]

    A fourth virus, Taï Forest virus (TAFV, Orthoebolavirus taiense) has caused a single recorded case of non-lethal human disease. Historical case fatality rates have varied significantly; the average fatality rate is approximately 50%. In outbreaks casused by Ebola virus, fatality rates have often ranged from 70–90%, though actual mortality may vary depending on outbreak conditions, timing of care, and available therapeutics. Ebola is transmitted through direct contact (via broken skin or mucous membranes) with infected bodily fluids—such as blood, vomit, urine, feces, saliva, sweat, semen or breast milk—or with surfaces or materials contaminated with such fluids.

    Ebola was first recognized in 1976 in near-simultaneous outbreaks in what are now the Democratic Republic of Congo (formerly Zaire) and South Sudan (formerly Sudan). Since then, there have been more than 35 documented outbreaks, primarily in Central and West Africa.

    Hantavirus

    Hantaviruses can cause diseases such as hantavirus pulmonary syndrome (HPS) and hemorrhagic fever with renal syndrome (HFRS). This family of viruses are usually spread to humans from rodents and can infect and cause serious disease in people worldwide. In the US, the most common hantavirus is Sin Nombre virus (SNV) which is spread by the deer mouse. 

    In 2026 there was an outbreak of Andes virus aboard a cruise ship in the Atlantic Ocean which has since been contained and declared over by international health agencies. The event resulted in 13 cases and three deaths globally, but there were no cases of Andes virus in the US associated with the outbreak. 

    Learn more about APHL's past Andes virus response

    Supporting Best Practices for Viral Special Pathogens

    Many public health laboratories in the US can conduct testing for several viral special pathogens. Frequently, testing for these pathogens are coordinated through the Laboratory Response Network using assays developed by the LRN and/or using commercially available assays. APHL also collaborates with the US Centers for Disease Control and Prevention (CDC) and African Society for Laboratory Medicine (ASLM) to develop guidance, implement training and provide necessary support for laboratories outside the US to ensure they are able to perform safe, high quality and efficient testing.

    Guide / Guidance
    2023

    Use this guide to evaluate potential laboratory biological exposure events; find resources and information that may be needed for treatment, symptom monitoring and follow up.

    Public Health Preparedness and Response, Biosafety and Biosecurity
    Tool / Work Aid
    2021

    Use this interactive toolkit to evaluate packaging and shipping of Category A & B Substances and their associated documentation. Download and open in Adobe Acrobat to utilize the forms’ interactive elements and complete the forms digitally.

    Public Health Preparedness and Response, Specimen Handling
    Tool / Work Aid
    2026

    Use this checklist to help identify potential gaps in institutional biosafety plans so you can prepare for and respond to suspected high consequence pathogens (HCP) and provide the necessary training to mitigate any enhanced exposure risks.

    Public Health Preparedness and Response, Biosafety and Biosecurity, Specimen Handling
    Tool / Work Aid
    Jun '26

    This template is designed to assist laboratories in the development of their risk assessment for the testing of orthoebolaviruses. File will auto-download upon opening.

    Public Health Preparedness and Response, Infectious Diseases, Emergency Preparedness and Response, Testing Methodology
    Tool / Work Aid
    Jun '26

    This template is designed to assist laboratories in the development of their risk assessment for Ebola disease. File will auto-download upon opening.

    Public Health Preparedness and Response, Infectious Diseases, Emergency Preparedness and Response, Testing Methodology
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